JAligner

Nowadays, JAligner is a topic of great importance in modern society. Its influence extends to various areas of daily life, from politics to technology, culture and economics. This article delves into the world of JAligner, exploring its many facets and effects on our daily lives. Through a detailed analysis, we will seek to shed light on the different aspects that make JAligner a relevant topic worthy of study today. From its impact on people's lives to its impact on the global environment, JAligner is a phenomenon that deserves to be examined in depth.

JAligner is an open source Java implementation of the Smith-Waterman algorithm[1] with Gotoh's improvement[2] for biological local pairwise sequence alignment using the affine gap penalty model. It was written by Ahmed Moustafa.

See also

References

  1. ^ Smith TF and Waterman MS (1981). Identification of common molecular subsequences. J Mol Biol, 147:195-197.
  2. ^ Gotoh O (1982). An improved algorithm for matching biological sequences. J Mol Biol, 162:705-708.
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